Course Modules

Module 1: Sharing data, KR, Ontologies, and the Semantic Web

Module 1: Sharing data, KR, Ontologies, and the Semantic Web
Module Completed Module In Progress Module Locked
Module 1: Sharing data, KR, Ontologies, and the Semantic Web 1424818    
  • BioMed Ontologies in Action - Bodenrieder, 2008 Attachment
    BioMed Ontologies in Action - Bodenrieder, 2008 BioMed Ontologies in Action - Bodenrieder, 2008
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • The Conundrum of Sharing Research Data - Borgman-2012-JASIS.pdf Attachment
    The Conundrum of Sharing Research Data - Borgman-2012-JASIS.pdf The Conundrum of Sharing Research Data - Borgman-2012-JASIS.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • BernersLee-SciAmerican2001.pdf Attachment
    BernersLee-SciAmerican2001.pdf BernersLee-SciAmerican2001.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • The Semantic Web Revisted Shadbolt-2006.pdf Attachment
    The Semantic Web Revisted Shadbolt-2006.pdf The Semantic Web Revisted Shadbolt-2006.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Bio2RDF Belleau JBI-2008.pdf Attachment
    Bio2RDF Belleau JBI-2008.pdf Bio2RDF Belleau JBI-2008.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • AllemangHendler-chpt3.pdf Attachment
    AllemangHendler-chpt3.pdf AllemangHendler-chpt3.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • ontology101.pdf Attachment
    ontology101.pdf ontology101.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Bizer, Heath & Berners-Lee, Linked-data.pdf Attachment
    Bizer, Heath & Berners-Lee, Linked-data.pdf Bizer, Heath & Berners-Lee, Linked-data.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Kabob - BioInfoIntegration Livingston-2015.pdf Attachment
    Kabob - BioInfoIntegration Livingston-2015.pdf Kabob - BioInfoIntegration Livingston-2015.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • GeneOntology2001.pdf Attachment
    GeneOntology2001.pdf GeneOntology2001.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • GeneOntology2019 - NAR2019 Attachment
    GeneOntology2019 - NAR2019 GeneOntology2019 - NAR2019
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • BarrySmith-OntologyofGeneOntology.pdf Attachment
    BarrySmith-OntologyofGeneOntology.pdf BarrySmith-OntologyofGeneOntology.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • SemWeb is full of Creeps-2006.pdf Attachment
    SemWeb is full of Creeps-2006.pdf SemWeb is full of Creeps-2006.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Module 2: Ontologies and querying the semantic web

Module 2: Ontologies and querying the semantic web
Module Completed Module In Progress Module Locked
Module 2: Ontologies and querying the semantic web 1424819    
  • BioPAX-Demir 2010.pdf Attachment
    BioPAX-Demir 2010.pdf BioPAX-Demir 2010.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • KarpEcoCyc ScienceMag-2001.pdf Attachment
    KarpEcoCyc ScienceMag-2001.pdf KarpEcoCyc ScienceMag-2001.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Pharmacovigilance in the Life Sciences LOD Cloud - AMIA 2017 Attachment
    Pharmacovigilance in the Life Sciences LOD Cloud - AMIA 2017 Pharmacovigilance in the Life Sciences LOD Cloud - AMIA 2017
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Anatomy Ontologies and Users - 2011 Attachment
    Anatomy Ontologies and Users - 2011 Anatomy Ontologies and Users - 2011
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Module 3: Knowledge base inference. The theory: logic and reasoning. The practice: rule-based systems and OWL

Module 3: Knowledge base inference. The theory: logic and reasoning. The practice: rule-based systems and OWL
Module Completed Module In Progress Module Locked
Module 3: Knowledge base inference. The theory: logic and reasoning. The practice: rule-based systems and OWL 1424820    
  • MYCIN - AI Journal - 1977.pdf Attachment
    MYCIN - AI Journal - 1977.pdf MYCIN - AI Journal - 1977.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • DDinteractionSWRL-2015.pdf Attachment
    DDinteractionSWRL-2015.pdf DDinteractionSWRL-2015.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • ThinkingOnWeb-chpt2.pdf Attachment
    ThinkingOnWeb-chpt2.pdf ThinkingOnWeb-chpt2.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Recasting the GeneOntology in OWL 2007.pdf Attachment
    Recasting the GeneOntology in OWL 2007.pdf Recasting the GeneOntology in OWL 2007.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • BioOntologies: current trends - 2006-Bodenreider-Stevens.pdf Attachment
    BioOntologies: current trends - 2006-Bodenreider-Stevens.pdf BioOntologies: current trends - 2006-Bodenreider-Stevens.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Optional reading: Matt Horridge's OWL tutorial External Url
    Optional reading: Matt Horridge's OWL tutorial Optional reading: Matt Horridge's OWL tutorial
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • OWL modeling of cancer staging (JBioSem, 2016) Attachment
    OWL modeling of cancer staging (JBioSem, 2016) OWL modeling of cancer staging (JBioSem, 2016)
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Optional Reading: CrossProductGO-JBI-2011.pdf Attachment
    Optional Reading: CrossProductGO-JBI-2011.pdf Optional Reading: CrossProductGO-JBI-2011.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • OWL in GO - Mungall-2014.pdf Attachment
    OWL in GO - Mungall-2014.pdf OWL in GO - Mungall-2014.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Module 4: Machine learning, big data, and methods for probabilistic and uncertain KR

Module 4: Machine learning, big data, and methods for probabilistic and uncertain KR
Module Completed Module In Progress Module Locked
Module 4: Machine learning, big data, and methods for probabilistic and uncertain KR 1424821    
  • Optional reading: ML and explanations (GangLuo, 2016) Attachment
    Optional reading: ML and explanations (GangLuo, 2016) Optional reading: ML and explanations (GangLuo, 2016)
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • DecisionAnalysis-Henrion-1991.pdf Attachment
    DecisionAnalysis-Henrion-1991.pdf DecisionAnalysis-Henrion-1991.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Gooch: Review of guideline systems - 2011.pdf Attachment
    Gooch: Review of guideline systems - 2011.pdf Gooch: Review of guideline systems - 2011.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • 2009oconnertemporalreasoning_ijmi.pdf Attachment
    2009oconnertemporalreasoning_ijmi.pdf 2009oconnertemporalreasoning_ijmi.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • ML in Bioinfomatics; Briefings in Bioinform-2006.pdf Attachment
    ML in Bioinfomatics; Briefings in Bioinform-2006.pdf ML in Bioinfomatics; Briefings in Bioinform-2006.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • TempsPerdue-Jamia2013.pdf Attachment
    TempsPerdue-Jamia2013.pdf TempsPerdue-Jamia2013.pdf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Special issue on NLP (and ML) - JAMIA 2013 External Url
    Special issue on NLP (and ML) - JAMIA 2013 Special issue on NLP (and ML) - JAMIA 2013
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Chpt 1, Machine Learning KMurphy, 2012 Attachment
    Chpt 1, Machine Learning KMurphy, 2012 Chpt 1, Machine Learning KMurphy, 2012
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
 
minimum score must view must submit must contribute