Course Syllabus
DESCRIPTION OF COURSE
The course provides an overview of the field of biomedical and health informatics. The overall goal of the course is to prepare students for broader understanding of the field in more specific areas, by developing basic understanding of the current areas of the field and relating methods of various topic areas to the field and to biomedical science in general.
COMPETENCIES
By the end of the course, students will be able to:
- Describe the relevance of different topic areas to the field of biomedical and health informatics;
- Identify the importance of different contributions to the field;
- Describe the maturity of different areas and contributions in the field;
- Assess contribution areas of the field in terms of their overall and expected contribution;
- Independently analyze a relevant contribution in the field in terms of its area of relevance, influence, maturity and contribution trajectory.
COURSE MATERIALS
The course material is covered through class lectures and discussions, assigned readings, assignments, and in-class activities. Assignments are intended to reinforce the other learning materials, and to provide opportunities to directly apply the concepts discussed. For some selected topics, experts in the field will provide short lectures that identify important areas of contribution.
TEXTBOOK
Primary text:
Biomedical Informatics: Computer Applications in Health Care and Biomedicine (Health Informatics), Shortliffe EH, Cimino JJ. Fourth edition, 2014.
Supplemental readings may also be required.
GRADING
The grading is divided up into four parts.
Part 1: The first part is the weekly assignments, consisting of various assignments based on the material covered in class. Assignments are intended to provide “hands-on” experience to reinforce concepts and provide a foundation for other course content. Assignments will account for 60% of the final grade.
Part 2: The second part of the grading is the topic presentation. Each student will select a specific topic from a list of defined topics and present a brief (10 minute) review of the topic, relating it to the general areas of the field. This presentation will account for 10% of the final grade.
Part 3: The third part of the grading is the final exam. There will be a final exam for the course, that will be distributed on Wednesday December 9, 2020, and due one week later on December 16. The exam is a take-home test, with a series of short answers designed to test the general understanding of the content of the course. The final exam will account for 20% of the final grade.
Part 3: 10% of the grade will be determined by class participation. Since this is a class involving in-class discussions, it is important for students to be actively participating in the learning environment.
SCHEDULE
The current schedule of topics for the course (subject to change) is as follows:
Date | Topic | Related Textbook Chapter |
30-Sep | Introduction to course; Informatics as a topic | 1 |
5-Oct | EHRs | 12 |
7-Oct | Standards & terminologies | 7 |
12-Oct | HIE | 13 |
14-Oct | Probability theory and decision making | 3 |
19-Oct | Clinical decision support | 22 |
21-Oct | NLP Part 1 | 8 |
26-Oct | NLP Part 2 | 8 |
28-Oct | Predictive analytics and secondary use | 2 |
2-Nov | Public health; Global health | 16 |
4-Nov | Management & use of biomedical data | 5, 14 |
9-Nov | Information retrieval and libraries; clinical research informatics | 21, 26 |
11-Nov | VETERANS DAY (No class) | |
16-Nov | AMIA (No class) | |
18-Nov | AMIA (No class) | |
23-Nov | Cognitive informatics | 4, 17 |
25-Nov | Bioinformatics | 24 |
30-Nov | Translational bioinformatics | 25 |
2-Dec | Education | 23 |
7-Dec | Imaging | 9, 20 |
9-Dec | Informatics and equity; Policy | 27 |
Course Summary:
Date | Details | Due |
---|---|---|
Wed Oct 7, 2020 | Assignment Assignment 1: Gather your health record | due by 11:59pm |
Assignment Assignment 2: Identifying data elements in a medical record | due by 11:59pm | |
Wed Oct 14, 2020 | Assignment Assignment 3: Basic and Advanced EHRs | due by 11:59pm |
Assignment Assignment 4: Building a Terminology | due by 11:59pm | |
Wed Oct 21, 2020 | Assignment Assignment 5: Health Information Exchange Examples | due by 11:59pm |
Assignment Assignment 6: Decision Tree and Sensitivity Analysis | due by 11:59pm | |
Wed Oct 28, 2020 | Assignment Assignment 7: Decision Support Implementation | due by 11:59pm |
Wed Nov 4, 2020 | Assignment Assignment 8: Building and Testing a Parser | due by 11:59pm |
Wed Nov 11, 2020 | Assignment Assignment 9: COVID-19 Care Cascade | due by 11:59pm |
Wed Nov 18, 2020 | Assignment Assignment 10: Machine Learning Classifier | due by 11:59pm |
Assignment Assignment 11: PubMed Literature Search | due by 11:59pm | |
Wed Nov 25, 2020 | Assignment Assignment 12: AMIA Week | due by 11:59pm |
Wed Dec 2, 2020 | Assignment Assignment 13: Data Visualization | due by 11:59pm |
Wed Dec 9, 2020 | Assignment Assignment 14: Genome Storage | due by 11:59pm |
Assignment Assignment 15: Informatics Education Content | due by 11:59pm | |
Wed Dec 16, 2020 | Assignment Assignment 16: Image-based Machine Learning | due by 11:59pm |
Assignment Final Exam | due by 11:59pm |